Click here to close now.

Welcome!

Agile Computing Authors: Carmen Gonzalez, Xenia von Wedel, Pat Romanski, Elizabeth White, Liz McMillan

Related Topics: Java IoT, Open Source Cloud, IoT User Interface, Agile Computing, @CloudExpo, @BigDataExpo

Java IoT: Article

How to Identify a MongoDB Performance Anti Pattern in Five Minutes

Analyzing the application

The other day I was looking at a web application that was using MongoDB as its central database. We were analyzing the application for potential performance problems and inside five minutes I detected what I must consider to be a MongoDB anti pattern and had a 40% impact on response time. The funny thing: It was a Java best practice that triggered it.

Analyzing the Application
The first thing I always do is look at the topology of an application to get a feel for it.

Overall Transaction Flow of the Application

As we see it's a modestly complex web application and it's using MongoDB as its datastore. Overall MongoDB contributes about 7% to the response time of the application. I noticed that about half of all transactions are actually calling MongoDB so I took a closer look.

Flow of Transactions that access MongoDB, showing 10% response time contribution of MongoDB

Those transactions that actually do call MongoDB spend about 10% of their response time in that popular document database. As a next step I wanted to know what was being executed against MongoDB.

Overview of all MongoDB commands. This shows that the JourneyCollection find and getCount contribute the most to response time

One immediately notices the first two lines, which contribute much more to the response time per transaction than all the others. What was interesting was that thegetCount on the JourneyCollection had the highest contribution time, but the developer responsible was not aware that he was even using it anywhere.

Things get interesting - the mysterious getCount call
Taking things one level deeper, we looked at all transactions that were executing the ominous getCount on the JourneyCollection.

Transactions that call JourneyCollection.getCount spend nearly half their time in MongoDB

What jumps out is that those particular transactions spend indeed over 40% of their time in MongoDB, so there was a big potential for improvement here. Another click and we looked at all MongoDB calls that were executed within the context of the same transaction as the getCount call we found so mysterious.

All MongoDB Statements that run within the same transaction context as the JourneyCollection.getCount

What struck us as interesting was that the number of executions per transaction of thefind and getCount on the JourneyCollection seemed closely connected. At this point we decided to look at the transactions themselves - we needed to understand why that particular MongoDB call was executed.

Single Transactions that execute the ominous getCount call

It's immediately clear that several different transaction types are executing that particulargetCount. What that meant for us is that the problem was likely in the core framework of that particular application rather than being specific to any one user action. Here is the interesting snippet:

The Transaction Trace shows where the getCount is executed exactly

We see that the WebService findJourneys spends all its time in the two MongoDB calls. The first is the actual find call to the Journey Collection. The MongoDB client is good at lazy loading, so the find does not actually do much yet. It only calls the server once we access the result set. We can see the round trip to MongoDB visualized in the call node at the end.

We also see the offending getCount. We see that it is executed by a method called sizewhich turns out to be com.mongodb.DBCursor.size method. This was news to our developer. Looking at several other transactions we found that this was a common pattern. Every time we search for something in the JourneyCollection the getCountwould be executed by com.mongodb.DBCursor.size. This always happens before we would really execute the send the find command to the server(which happens in the callmethod). So we used CompuwareAPM DTM's (a.k.a dynaTrace) developer integration and took a look at the offending code. Here is what we found:

BasicDBObject fields = new BasicDBObject();
fields.put(journeyStr + "." + MongoConstants.ID, 1);
fields.put(MongoConstants.ID, 0);

Collection locations = find(patternQuery, fields);

ArrayList results = new ArrayList(locations.size());
for (DBObject dbObject : locations) {
String loc = dbObject.getString(journeyStr);
results.add(loc);
}
return results;


The code looks harmless enough; we execute a find, create an array for the result and fill it. The offender is the location.size(). MongoDBs DBCursor is similar to the ResultSet in JDBC, it does not return the whole data set at once, but only a subset. As a consequence it doesn't really know how many elements the find will end up with. The only way for MongoDB to determine the final size seems to be to execute a getCountwith the same criteria as the original find. In our case that additional unnecessary roundtrip made up 40% of the web services response time!

An Anti-Patter triggered by a Best Practice
So it turns out that calling size on the DBCursor must be considered an anti-pattern! The real funny thing is that the developer thought he was writing performant code. He was following the best practice to pre-size arrays. This avoids any unnecessary re-sizing. In this particular case however, that minor theoretical performance improvement led to a 40% performance degradation!

Conclusion
The take away here is not that MongoDB is bad or doesn't perform. In fact the customer is rather happy with it. But mistakes happen and similar to other database applications we need to have the visibility into a running application to see how much it contributes to the overall response time. We also need to have that visibility to understand which statements are called where and why.

In addition this also demonstrates nicely why premature micro optimization, without leveraging an APM solution, in production will not lead to better performance. In some cases - like this one - it can actually lead to worse performance.

More Stories By Michael Kopp

Michael Kopp has over 12 years of experience as an architect and developer in the Enterprise Java space. Before coming to CompuwareAPM dynaTrace he was the Chief Architect at GoldenSource, a major player in the EDM space. In 2009 he joined dynaTrace as a technology strategist in the center of excellence. He specializes application performance management in large scale production environments with special focus on virtualized and cloud environments. His current focus is how to effectively leverage BigData Solutions and how these technologies impact and change the application landscape.

Comments (0)

Share your thoughts on this story.

Add your comment
You must be signed in to add a comment. Sign-in | Register

In accordance with our Comment Policy, we encourage comments that are on topic, relevant and to-the-point. We will remove comments that include profanity, personal attacks, racial slurs, threats of violence, or other inappropriate material that violates our Terms and Conditions, and will block users who make repeated violations. We ask all readers to expect diversity of opinion and to treat one another with dignity and respect.


@ThingsExpo Stories
"ciqada is a combined platform of hardware modules and server products that lets people take their existing devices or new devices and lets them be accessible over the Internet for their users," noted Geoff Engelstein of ciqada, a division of Mars International, in this SYS-CON.tv interview at @ThingsExpo, held June 9-11, 2015, at the Javits Center in New York City.
"We have seen the evolution of WebRTC right from the starting point to what it has become today, that people are using in real applications," noted Dr. Natasha Tamaskar, Vice President and Head of Cloud and Mobile Strategy and Ecosystem at GENBAND, in this SYS-CON.tv interview at WebRTC Summit, held June 9-11, 2015, at the Javits Center in New York City.
The 3rd International WebRTC Summit, to be held Nov. 4–6, 2014, at the Santa Clara Convention Center in Santa Clara, CA, announces that its Call for Papers is now open. Topics include all aspects of improving IT delivery by eliminating waste through automated business models leveraging cloud technologies. WebRTC Summit is co-located with 15th International Cloud Expo, 6th International Big Data Expo, 3rd International DevOps Summit and 2nd Internet of @ThingsExpo. WebRTC (Web-based Real-Time Communication) is an open source project supported by Google, Mozilla and Opera that aims to enable bro...
It is one thing to build single industrial IoT applications, but what will it take to build the Smart Cities and truly society-changing applications of the future? The technology won’t be the problem, it will be the number of parties that need to work together and be aligned in their motivation to succeed. In his session at @ThingsExpo, Jason Mondanaro, Director, Product Management at Metanga, discussed how you can plan to cooperate, partner, and form lasting all-star teams to change the world and it starts with business models and monetization strategies.
Internet of Things (IoT) will be a hybrid ecosystem of diverse devices and sensors collaborating with operational and enterprise systems to create the next big application. In their session at @ThingsExpo, Bramh Gupta, founder and CEO of robomq.io, and Fred Yatzeck, principal architect leading product development at robomq.io, discussed how choosing the right middleware and integration strategy from the get-go will enable IoT solution developers to adapt and grow with the industry, while at the same time reduce Time to Market (TTM) by using plug and play capabilities offered by a robust IoT ...
The 4th International Internet of @ThingsExpo, co-located with the 17th International Cloud Expo - to be held November 3-5, 2015, at the Santa Clara Convention Center in Santa Clara, CA - announces that its Call for Papers is open. The Internet of Things (IoT) is the biggest idea since the creation of the Worldwide Web more than
SYS-CON Events announced today that ProfitBricks, the provider of painless cloud infrastructure, will exhibit at SYS-CON's 17th International Cloud Expo®, which will take place on November 3–5, 2015, at the Santa Clara Convention Center in Santa Clara, CA. ProfitBricks is the IaaS provider that offers a painless cloud experience for all IT users, with no learning curve. ProfitBricks boasts flexible cloud servers and networking, an integrated Data Center Designer tool for visual control over the cloud and the best price/performance value available. ProfitBricks was named one of the coolest Clo...
17th Cloud Expo, taking place Nov 3-5, 2015, at the Santa Clara Convention Center in Santa Clara, CA, will feature technical sessions from a rock star conference faculty and the leading industry players in the world. Cloud computing is now being embraced by a majority of enterprises of all sizes. Yesterday's debate about public vs. private has transformed into the reality of hybrid cloud: a recent survey shows that 74% of enterprises have a hybrid cloud strategy. Meanwhile, 94% of enterprises are using some form of XaaS – software, platform, and infrastructure as a service.
"In the IoT space we are helping customers, mostly enterprises and industry verticals where time-to-value is critical, and we help them with the ability to do faster insights and actions using our platform so they can transform their business operations," explained Venkat Eswara, VP of Marketing at Vitria, in this SYS-CON.tv interview at @ThingsExpo, held June 9-11, 2015, at the Javits Center in New York City.
Discussions about cloud computing are evolving into discussions about enterprise IT in general. As enterprises increasingly migrate toward their own unique clouds, new issues such as the use of containers and microservices emerge to keep things interesting. In this Power Panel at 16th Cloud Expo, moderated by Conference Chair Roger Strukhoff, panelists addressed the state of cloud computing today, and what enterprise IT professionals need to know about how the latest topics and trends affect their organization.
WebRTC converts the entire network into a ubiquitous communications cloud thereby connecting anytime, anywhere through any point. In his session at WebRTC Summit,, Mark Castleman, EIR at Bell Labs and Head of Future X Labs, will discuss how the transformational nature of communications is achieved through the democratizing force of WebRTC. WebRTC is doing for voice what HTML did for web content.
To many people, IoT is a buzzword whose value is not understood. Many people think IoT is all about wearables and home automation. In his session at @ThingsExpo, Mike Kavis, Vice President & Principal Cloud Architect at Cloud Technology Partners, discussed some incredible game-changing use cases and how they are transforming industries like agriculture, manufacturing, health care, and smart cities. He will discuss cool technologies like smart dust, robotics, smart labels, and much more. Prepare to be blown away with a glimpse of the future.
Connected things, systems and people can provide information to other things, systems and people and initiate actions for each other that result in new service possibilities. By taking a look at the impact of Internet of Things when it transitions to a highly connected services marketplace we can understand how connecting the right “things” and leveraging the right partners can provide enormous impact to your business’ growth and success. In her general session at @ThingsExpo, Esmeralda Swartz, VP, Marketing Enterprise and Cloud at Ericsson, discussed how this exciting emergence of layers of...
The 17th International Cloud Expo has announced that its Call for Papers is open. 17th International Cloud Expo, to be held November 3-5, 2015, at the Santa Clara Convention Center in Santa Clara, CA, brings together Cloud Computing, APM, APIs, Microservices, Security, Big Data, Internet of Things, DevOps and WebRTC to one location. With cloud computing driving a higher percentage of enterprise IT budgets every year, it becomes increasingly important to plant your flag in this fast-expanding business opportunity. Submit your speaking proposal today!
The 5th International DevOps Summit, co-located with 17th International Cloud Expo – being held November 3-5, 2015, at the Santa Clara Convention Center in Santa Clara, CA – announces that its Call for Papers is open. Born out of proven success in agile development, cloud computing, and process automation, DevOps is a macro trend you cannot afford to miss. From showcase success stories from early adopters and web-scale businesses, DevOps is expanding to organizations of all sizes, including the world's largest enterprises – and delivering real results. Among the proven benefits, DevOps is corr...
With major technology companies and startups seriously embracing IoT strategies, now is the perfect time to attend @ThingsExpo in Silicon Valley. Learn what is going on, contribute to the discussions, and ensure that your enterprise is as "IoT-Ready" as it can be! Internet of @ThingsExpo, taking place Nov 3-5, 2015, at the Santa Clara Convention Center in Santa Clara, CA, is co-located with 17th Cloud Expo and will feature technical sessions from a rock star conference faculty and the leading industry players in the world. The Internet of Things (IoT) is the most profound change in personal an...
The Internet of Things is not only adding billions of sensors and billions of terabytes to the Internet. It is also forcing a fundamental change in the way we envision Information Technology. For the first time, more data is being created by devices at the edge of the Internet rather than from centralized systems. What does this mean for today's IT professional? In this Power Panel at @ThingsExpo, moderated by Conference Chair Roger Strukhoff, panelists addressed this very serious issue of profound change in the industry.
SYS-CON Events announced today that kintone has been named “Bronze Sponsor” of SYS-CON's 17th International Cloud Expo®, which will take place on November 3–5, 2015, at the Santa Clara Convention Center in Santa Clara, CA. kintone promotes cloud-based workgroup productivity, transparency and profitability with a seamless collaboration space, build your own business application (BYOA) platform, and workflow automation system.
Buzzword alert: Microservices and IoT at a DevOps conference? What could possibly go wrong? In this Power Panel at DevOps Summit, moderated by Jason Bloomberg, the leading expert on architecting agility for the enterprise and president of Intellyx, panelists peeled away the buzz and discuss the important architectural principles behind implementing IoT solutions for the enterprise. As remote IoT devices and sensors become increasingly intelligent, they become part of our distributed cloud environment, and we must architect and code accordingly. At the very least, you'll have no problem fillin...
Explosive growth in connected devices. Enormous amounts of data for collection and analysis. Critical use of data for split-second decision making and actionable information. All three are factors in making the Internet of Things a reality. Yet, any one factor would have an IT organization pondering its infrastructure strategy. How should your organization enhance its IT framework to enable an Internet of Things implementation? In his session at @ThingsExpo, James Kirkland, Red Hat's Chief Architect for the Internet of Things and Intelligent Systems, described how to revolutionize your archit...